Melissa Louise Cline

US Patent:

20040049354, Mar 11, 2004

Filed:

Apr 25, 2003

Appl. No.:

10/423403

Inventors:

Ann Loraine - El Cerrito CA, US
Melissa Cline - Santa Cruz CA, US
Gregg Helt - Healdsburg CA, US
Michael Siani-Rose - San Francisco CA, US
David Kulp - Albany CA, US
Ron Shigeta - Berkeley CA, US

International Classification:

G06F019/00
G01N033/48
G01N033/50

US Classification:

702/019000, 702/020000

Abstract:

A system for analyzing alternative splice variant sequences is described, comprising an input manager for receiving alternative splice variant sequences that are identified by one or more probe sets, a correlator that correlates functional domains with each of the alternative splice variant sequences and an associater that associates putative functions with the alternative splice variant sequences based upon a combination of the functional domains. A method for analyzing alternative splice variant sequences is also described, comprising the acts of receiving alternative splice variant sequences that are identified by one or more probe sets, correlating functional domains with the alternative splice variant sequences and associating putative functions with the alternative splice variant sequences based upon a combination of the functional domains.

US Patent:

20070087368, Apr 19, 2007

Filed:

Nov 27, 2006

Appl. No.:

11/563298

Inventors:

Ann Loraine - El Cerrito CA, US
Melissa Cline - Santa Cruz CA, US
Gregg Helt - Healdsburg CA, US
Michael Siani-Rose - San Francisco CA, US
David Kulp - Northampton MA, US
Ron Shigeta - Berkeley CA, US

Assignee:

Affymetrix, INC. - Santa Clara CA

International Classification:

C12Q 1/68
G06F 19/00

US Classification:

435006000, 702020000

Abstract:

A system for analyzing alternative splice variant sequences is described, comprising an input manager for receiving alternative splice variant sequences that are identified by one or more probe sets, a correlator that correlates functional domains with each of the alternative splice variant sequences and an associater that associates putative functions with the alternative splice variant sequences based upon a combination of the functional domains. A method for analyzing alternative splice variant sequences is also described, comprising the acts of receiving alternative splice variant sequences that are identified by one or more probe sets, correlating functional domains with the alternative splice variant sequences and associating putative functions with the alternative splice variant sequences based upon a combination of the functional domains.